- CLC GENOMICS WORKBENCH 20 MANUAL HOW TO
- CLC GENOMICS WORKBENCH 20 MANUAL MANUAL
- CLC GENOMICS WORKBENCH 20 MANUAL FULL
Java 6, Java 7, Java 8, Python, Python 3, R, Perl 5, Julia, Node GNU (C, C++, Fortran), clang, llvm, Intel Parallel Studio
CLC GENOMICS WORKBENCH 20 MANUAL FULL
Software Environment Domainįor the full list of installed scientific software refer to the Software Overview page or issue the module spider command on the Ceres login node.īeoPEST, EPIC, KINEROS2, MED-FOES, SWAT, h2o Users access a login node to submit jobs to the cluster’s resource manager (SLURM), and access other cluster console functions. The established HPC best practice is to provide login nodes. Since most HPC compute nodes are dedicated to running HPC cluster jobs, direct access to the nodes is discouraged. Shared storage consists of 2.3PB high-performance Lustre space, 1.4PB high-performance BeeGFS space and 300TB of backed-up ZFS space. In aggregate, there are more than 9000 compute cores (18000 logical cores) with 110 terabytes (TB) of total RAM, 500TB of total local storage, and 3.7 petabyte (PB) of shared storage. In addition there are a specialized data transfer node and several service nodes. 72 logical cores on 2 x 18 core Intel Xeon Processors (6140 2.30GHz 25MB Cache) with hyper-threading turned ON.96 logical cores on 2 x 24 core Intel Xeon Processors (6248R 3GHz 27.5MB Cache or 6248 2.50GHz 27.5MB Cache) with hyper-threading turned ON.80 logical cores on 2 x 20 core Intel Xeon Processors (6148 2.40GHz 27.5MB Cache or 6248 2.50GHz 27.5MB Cache) with hyper-threading turned ON.96 logical cores on 2 x 24 core Intel Xeon Processors (6240R 2.40GHz 36MB Cache) with hyper-threading turned ON.Mellanox ConnectX®3 VPI FDR InfiniBand.1.5TB SSD used for temporary local storage.250GB Intel DC S3500 Series 2.5” SATA 6.0Gb/s SSDs (used to host the OS and provide small local scratch storage).72 logical cores on 2 x 18 core Intel Xeon Processors (6140 2.30GHz 25MB Cache or 6240 2.60GHz 25MB Cache) with hyper-threading turned ON.Currently, the following compute nodes are available on the Ceres cluster. Ceres is designed to enable large-scale computing and large-scale storage. computing in batch mode with a batch scriptĬeres is the dedicated high performance computing (HPC) infrastructure for ARS researchers on ARS SCINet.computing in interactive mode with salloc.
CLC GENOMICS WORKBENCH 20 MANUAL HOW TO
The instructional video at demonstrates how to transfer files between local computer, Ceres, Atlas and Juno using Globus. Instead data that cannot be easily reproduced should be manually backed up to Juno. Note: /KEEP storage discussed in the video at 16:20 is no longer available. Users who are new to the HPC environment may benefit from the following Ceres onboarding video which covers much of the material contained in this guide plus some Unix basics.Ĭeres Onboarding (Intro to SCINet Ceres HPC) (length 42:13) Compiling Software, Installing R/Perl/Python Packages and Using Containers.Local Scratch Space on Large Memory Nodes.Requesting the proper number of nodes and cores.Running Application Jobs on Compute Nodes.Local Sharing of Files with Other Users.
CLC GENOMICS WORKBENCH 20 MANUAL MANUAL
SCINet Ceres User Manual Table of Contents
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